Neither DjbDNS, BIND, nor MSDNS support queries where QDCOUNT > 1. DjbDNS ignores queries where QDCOUNT > 1. Microsoft DNS server replies with a "format error", and the qdcount is set to the number of questions sent to the server. BIND 8 replies with a "format error", and QDCOUNT is set to zero.
Realistically, DNS servers should problably reply with "not implemented" instead of "format error".
Some discussion of the fact that QDCOUNT > 1 queries are not handled by modern-day DNS servers:
In summary, the nitty gritty implementation details of handling multiple question queries in a single packet make this difficult to correctly handle.
I'm making the handling of multiple QDCOUNT queries a low priority in MaraDNS.